Focus areas

  • Title

    A Multi-target Bayesian Transformer Framework for Predicting Cardiovascular Disease Biomarkers during Pandemics

    AUTHORS
    Inekwe T, Agu E, Mkandawire W, Colubri A
    PUBLICATION
    arXiv. 2025 2509.01794v1
    LINKS
  • Title

    A Genetic Neural Architecture Search Framework to Predict Biomarker Status in Cardiovascular Disease Patients during Pandemics

    AUTHORS
    Inekwe T, Agu E, Mkandawire W. Colubri A
    PUBLICATION
    2025 IEEE/ACM Conference on Connected Health: Applications, Systems and Engineering Technologies (CHASE), New York, NY, USA, 2025, pp. 45-56
    LINKS
  • Title

    An epidemiological modeling investigation of the long-term changing dynamics of the plague epidemics in Hong Kong

    AUTHORS
    Musa SS, Zhao S, Mkandawire WW, Colubri A, He D
    PUBLICATION
    Math Biosci Eng 2024, 21(10): 7435-7453
    LINKS
  • Title

    Biomarker Trajectory Prediction and Causal Analysis of the Impact of the Covid-19 Pandemic on CVD Patients using Machine Learning

    AUTHORS
    Inekwe T, Mkandawire WW, Wee B, Agu E, Colubri A
    PUBLICATION
    2024 IEEE/ACM Conference on Connected Health: Applications, Systems and Engineering Technologies (CHASE), Wilmington, DE, USA, 2024, pp. 1-12
    LINKS
  • Title

    The effect of Behavioral Factors and Intervention Strategies on Pathogen Transmission: Insights from a Two-Week Epidemic Game at Wenzhou-Kean University in China

    AUTHORS
    Musa SS, Mkandawire W, Inekwe T, Dong Y, Grozdani A, Hong H, Khandpekar M, Nowak SA, Young JG, Wong A, King D, Colubri A
    PUBLICATION
    medRxiv. 2024.12.14.24318955
    LINKS
  • Title

    Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements

    AUTHORS
    Pratt HE, Andrews G, Shedd N, Phalke N, Li T, Pampari A, Jensen M, Wen C, Consortium P, Gandal MJ, Geschwind DH, Gerstein M, Moore J, Kundaje A, Colubri A, Weng Z
    PUBLICATION
    Sci Adv. 2024 May 24;10(21):eadj4452
  • Title

    Evaluating the spike in the symptomatic proportion of SARS-CoV-2 in China in 2022 with variolation effects: a modeling analysis

    AUTHORS
    Musa SS, Zhao S, Abdulrashid I, Qureshi S, Colubri A, He D
    PUBLICATION
    Infect Dis Model. 2024 Mar 11;9(2):601-617
  • Title

    Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing

    AUTHORS
    Levine ZC, Sene A, Mkandawire WW, Deme AB, Ndiaye T, Sy M, Gaye A, Diedhiou Y, Mbaye AM, Ndiaye IM, Gomis J, Ndiop M, Sene D, Faye Paye M, MacInnis BL, Schaffner SF, Park DJ, Badiane AS, Colubri A, Ndiaye M, Sy N, Sabeti PC, Ndiaye D, Siddle KJ
    PUBLICATION
    Nat Commun. 2024 Jan 25;15(1):747
  • Title

    Derivation and Internal Validation of a Mortality Prognostication Machine Learning Model in Ebola Virus Disease Using Iterative Point-of-Care Biomarkers

    AUTHORS
    Bearnot CJ, Laghari R, Mbong EN, Muhayangabo RF, Butler K, Gainey M, Perera SM, Michelow IC, Tang OY, Levine AC, Colubri A, Aluisio AR
    PUBLICATION
    Open Forum Infectious Diseases, 2024; ofad689
  • Title

    Performance of Screening for SARS-CoV-2 using Rapid Antigen Tests to Detect Incidence of Symptomatic and Asymptomatic SARS-CoV-2 Infection: findings from the Test Us at Home prospective cohort study

    AUTHORS
    Soni A, Herbert C, Lin H, Yan Y, Pretz C, Stamegna P, …, Colubri A, O'Connor L, Lemon SC, Fahey N, Luzuriaga KL, Hafer N, Roth K, Lowe T, Stenzel T, Heetderks W, Broach J, McManus DD
    PUBLICATION
    Annals of Internal Medicine. 2023 Jul 4
  • Title

    Knowledge, Attitudes and Practices Regarding the Use of Mobile Travel Health Apps

    AUTHORS
    Machoko MMP, Dong Y, Grozdani A, Hong H, Oliver E, Hyle EP, Ryan ET, Walker AT, Colubri A, LaRocque RC
    PUBLICATION
    J Travel Med. 2023 Jul 6:taad089
  • Title

    Comparison of Rapid Antigen Tests' Performance Between Delta and Omicron Variants of SARS-CoV-2 : A Secondary Analysis From a Serial Home Self-testing Study

    AUTHORS
    Soni A, Herbert C, Filippaios A, Broach J, Colubri A, …, Hafer N, Luzuriaga K, Barton B, Heetderks W, Manabe YC, McManus D
    PUBLICATION
    Ann Intern Med. 2022 Dec;175(12):1685-1692
  • Title

    Analyzing the impact of a real-life outbreak simulator on pandemic mitigation: An epidemiological modeling study

    AUTHORS
    Specht I, Sani K, Loftness BC, Hoffman C, Gionet G, Bronson A, Marshall J, Decker C, Bailey L, Siyanbade T, Kemball M, Pickett BE, Hanage WP, Brown T, Sabeti PC, Colubri A
    PUBLICATION
    Patterns (N Y). 2022 Aug 12;3(8):100572
  • Title

    Using machine learning to predict survival in children with Ebola Virus Disease

    AUTHORS
    Genisca AE, Butler K, Gainey M, Chu TC, Huang L, Mbong EN, Kennedy SB, Laghari R, Nganga F, Muhayangabo RF, Vaishnav H, Perera SM, Adeniji M, Levine AC, Michelow IC, Colubri A
    PUBLICATION
    PLOS Neglected Tropical Diseases. 2022 Oct 12;16(10):e0010789
  • Title

    Multimodal surveillance of SARS-CoV-2 at a university enables development of a robust outbreak response framework

    AUTHORS
    Petros BA, Paull JS, Tomkins-Tinch CH, Loftness B, ..., Colubri A.; MacInnis BL, Ozsoy AZ, Parrie E, Sholtes K, Siddle KJ, Fry B, Luban J, Park DJ, Marshall J, Bronson A, Schaffner SF, Sabeti PC
    PUBLICATION
    Cell Med. 2022 Dec 9;3(12):883-900.e13
  • Title

    Risk Prediction Score for Pediatric Patients with Suspected Ebola Virus Disease

    AUTHORS
    Genisca AE, Chu TC, Huang L, Gainey M, Adeniji M, Mbong EN, Kennedy SB, Laghari R, Nganga F, Muhayangabo RF, Vaishnav H, Perera SM, Colubri A, Levine AC, Michelow IC
    PUBLICATION
    Emerg Infect Dis. 2022 Jun;28(6):1189-1197
  • Title

    Ancestry-inclusive dog genomics challenges popular breed stereotypes

    AUTHORS
    Morrill K, Hekman J, Li X, McClure J, Logan B, Goodman L, Gao M, Dong Y, Alonso M, Carmichael E, Snyder-Mackler N, Alonso J, Noh HJ, Johnson J, Koltookian M, Lieu C, Megquier K, Swofford R, Turner-Maier J, White ME, Weng Z, Colubri A, Genereux DP, Lord KA, Karlsson EK
    PUBLICATION
    Science. 2022 Apr 29;376(6592):eabk0639
  • Title

    Containing the spread of mumps on college campuses

    AUTHORS
    Shah M, Ferra G, Fitzgerald S, Barreira PJ, Sabeti PC, Colubri A
    PUBLICATION
    R Soc Open Sci. 2022 Jan 26;9(1):210948
  • Title

    The case for altruism in institutional diagnostic testing

    AUTHORS
    Specht I, Sani K, Botti-Lodovico Y, Hughes M, Heumann K, Bronson A, Marshall J, Baron E, Parrie E, Glennon O, Fry B, Colubri A, Sabeti PC
    PUBLICATION
    Sci Rep. 2022 Feb 3;12(1):1857
  • Title

    Sciviewer enables interactive visual interrogation of single-cell RNA-Seq data from the python programming environment

    AUTHORS
    Kotliar D, Colubri A
    PUBLICATION
    Bioinformatics. 2021 Oct 2:btab689
  • Title

    The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response

    AUTHORS
    Botti-Lodovico Y, Nair P, Nosamiefan D, Stremlau M, Schaffner S, Agignoae SV, Aiyepada JO, Ajogbasile FV, Akpede GO, Alhasan F, Andersen KG, Asogun DA, Ayodeji OO, Badiane AS, Barnes K, Bauer MR, Bell-Kareem A, Benard ME, Benevolence EO, Blessing O, Boehm CK, Boisen ML, Bond NG, Branco LM, Butts MJ, Carter A, Colubri A, …, Vinzé A, Vodzak ME, Welch N, Wurie HI, Zoumarou D, Grant DS, Ndiaye D, MacInnis B, Sabeti PC, Happi C
    PUBLICATION
    Viruses. 2021 Aug 13;13(8):1605
  • Title

    Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

    AUTHORS
    Barnes KG, Lachenauer AE, Nitido A, Siddiqui S, Gross R, Beitzel B, Siddle KJ, Freije CA, Dighero-Kemp B, Mehta SB, Carter A, Uwanibe J, Ajogbasile F, Olumade T, Odia I, Sandi JD, Momoh M, Metsky HC, Boehm CK, Lin AE, Kemball M, Park DJ, Branco L, Boisen M, Sullivan B, Amare MF, Tiamiyu AB, Parker ZF, Iroezindu M, Grant DS, Modjarrad K, Myhrvold C, Garry RF, Palacios G, Hensley LE, Schaffner SF, Happi CT, Colubri A, Sabeti PC
    PUBLICATION
    Nature Comm. 2020 Aug 17;11(1):4131
  • Title

    Individual-level Modeling of COVID-19 Epidemic Risk

    AUTHORS
    Colubri A, Yadav K, Jha A, Sabeti PC
    PUBLICATION
    arXiv. 2020 1908.06822v1
    LINKS
  • Title

    Preventing Outbreaks through Interactive, Experiential Real-Life Simulations

    AUTHORS
    Colubri A, Kemball M, Sani K, Boehm C, Mutch-Jones K, Fry B, Brown T, Sabeti PC
    PUBLICATION
    Cell. 2020 Sep 17;182(6):1366-1371